samplename filename condition paired stranded CON_3I4_BR1 /media/raid/data/pantelis/rnaseq/bam/3I4/con1.bam CON_3I4 single forward CON_3I4_BR2 /media/raid/data/pantelis/rnaseq/bam/3I4/con2.bam CON_3I4 single forward DOX_3I4_BR1 /media/raid/data/pantelis/rnaseq/bam/3I4/dox1.bam DOX_3I4 single forward DOX_3I4_BR2 /media/raid/data/pantelis/rnaseq/bam/3I4/dox2.bam DOX_3I4 single forward CON_76_BR1 /media/raid/data/pantelis/rnaseq/bam/76/PH1.bam CON_76 single forward CON_76_BR2 /media/raid/data/pantelis/rnaseq/bam/76/PH3.bam CON_76 single forward DOX_76_BR1 /media/raid/data/pantelis/rnaseq/bam/76/PH2.bam DOX_76 single forward DOX_76_BR2 /media/raid/data/pantelis/rnaseq/bam/76/PH4.bam DOX_76 single forward